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JASPAR matrix models:
ID name species class family Sequence logo
MA0004.1  Arnt  Mus musculus   Zipper-Type  Helix-Loop-Helix 
MA0006.1  Arnt::Ahr  Mus musculus   Zipper-Type  Helix-Loop-Helix 
MA0009.1  Mus musculus   Beta-Hairpin-Ribbon 
MA0017.1  NR2F1  Homo sapiens   Zinc-coordinating  Hormone-nuclear Receptor 
MA0019.1  Ddit3::Cebpa  Rattus norvegicus   Zipper-Type  Leucine Zipper 
MA0025.1  NFIL3  Homo sapiens   Zipper-Type  Leucine Zipper 
MA0027.1  En1  Mus musculus   Helix-Turn-Helix  Homeo 
MA0028.1  ELK1  Homo sapiens   Winged Helix-Turn-Helix  Ets 
MA0029.1  Mecom  Mus musculus   Zinc-coordinating  BetaBetaAlpha-zinc finger 
MA0030.1  FOXF2  Homo sapiens   Winged Helix-Turn-Helix  Forkhead 
MA0031.1  FOXD1  Homo sapiens   Winged Helix-Turn-Helix  Forkhead 
MA0032.1  FOXC1  Homo sapiens   Winged Helix-Turn-Helix  Forkhead 
MA0033.1  FOXL1  Homo sapiens   Winged Helix-Turn-Helix  Forkhead 
MA0038.1  Gfi1  Rattus norvegicus   Zinc-coordinating  BetaBetaAlpha-zinc finger 
MA0040.1  Foxq1  Rattus norvegicus   Winged Helix-Turn-Helix  Forkhead 
MA0041.1  Foxd3  Rattus norvegicus   Winged Helix-Turn-Helix  Forkhead 
MA0042.1  FOXI1  Homo sapiens   Winged Helix-Turn-Helix  Forkhead 
MA0043.1  HLF  Homo sapiens   Zipper-Type  Leucine Zipper 
MA0046.1  HNF1A  Vertebrata   Helix-Turn-Helix  Homeo 
MA0048.1  NHLH1  Homo sapiens   Zipper-Type  Helix-Loop-Helix 
MA0051.1  IRF2  Homo sapiens   Winged Helix-Turn-Helix  IRF 
MA0056.1  MZF1_1-4  Homo sapiens   Zinc-coordinating  BetaBetaAlpha-zinc finger 
MA0057.1  MZF1_5-13  Homo sapiens   Zinc-coordinating  BetaBetaAlpha-zinc finger 
MA0059.1  MYC::MAX  Homo sapiens   Zipper-Type  Helix-Loop-Helix 
MA0063.1  Nkx2-5  Mus musculus   Helix-Turn-Helix  Homeo 
MA0066.1  PPARG  Homo sapiens   Zinc-coordinating  Hormone-nuclear Receptor 
MA0067.1  Pax2  Mus musculus   Helix-Turn-Helix  Homeo 
MA0068.1  Pax4  Mus musculus   Helix-Turn-Helix  Homeo 
MA0069.1  Pax6  Homo sapiens   Helix-Turn-Helix  Homeo 
MA0070.1  PBX1  Homo sapiens   Helix-Turn-Helix  Homeo 
MA0071.1  RORA_1  Homo sapiens   Zinc-coordinating  Hormone-nuclear Receptor 
MA0072.1  RORA_2  Homo sapiens   Zinc-coordinating  Hormone-nuclear Receptor 
MA0073.1  RREB1  Homo sapiens   Zinc-coordinating  BetaBetaAlpha-zinc finger 
MA0074.1  RXRA::VDR  Homo sapiens   Zinc-coordinating  Hormone-nuclear Receptor 
MA0075.1  Prrx2  Mus musculus   Helix-Turn-Helix  Homeo 
MA0077.1  SOX9  Homo sapiens   Other Alpha-Helix  High Mobility Group box (HMG) 
MA0078.1  Sox17  Mus musculus   Other Alpha-Helix  High Mobility Group box (HMG) 
MA0081.1  SPIB  Homo sapiens   Winged Helix-Turn-Helix  Ets 
MA0084.1  SRY  Homo sapiens   Other Alpha-Helix  High Mobility Group box (HMG) 
MA0087.1  Sox5  Mus musculus   Other Alpha-Helix  High Mobility Group box (HMG) 
MA0088.1  znf143  Xenopus laevis   Zinc-coordinating  BetaBetaAlpha-zinc finger 
MA0089.1  NFE2L1::MafG  Gallus gallus   Zipper-Type  Leucine Zipper 
MA0090.1  TEAD1  Homo sapiens   Helix-Turn-Helix  Homeo 
MA0091.1  TAL1::TCF3  Homo sapiens   Zipper-Type  Helix-Loop-Helix 
MA0092.1  Hand1::Tcfe2a  Mus musculus   Zipper-Type  Helix-Loop-Helix 
MA0101.1  REL  Homo sapiens   Ig-fold  Rel 
MA0107.1  RELA  Homo sapiens   Ig-fold  Rel 
MA0108.2  TBP    Beta-sheet  TATA-binding 
MA0109.1  Hltf  Oryctolagus cuniculus   Zinc-coordinating  GATA 
MA0111.1  Spz1  Mus musculus   Other  Other 
MA0115.1  NR1H2::RXRA  Homo sapiens   Zinc-coordinating  Hormone-nuclear Receptor 
MA0116.1  Zfp423  Rattus norvegicus   Zinc-coordinating  BetaBetaAlpha-zinc finger 
MA0117.1  Mafb  Rattus norvegicus   Zipper-Type  Leucine Zipper 
MA0119.1  TLX1::NFIC  Homo sapiens   Helix-Turn-Helix::Other  Homeo::Nuclear Factor I-CCAAT-binding 
MA0122.1  Nkx3-2  Mus musculus   Helix-Turn-Helix  Homeo 
MA0124.1  NKX3-1  Homo sapiens   Helix-Turn-Helix  Homeo 
MA0125.1  Nobox  Mus musculus   Helix-Turn-Helix  Homeo 
MA0130.1  ZNF354C  Homo sapiens   Zinc-coordinating  BetaBetaAlpha-zinc finger 
MA0131.1  HINFP  Homo sapiens   Zinc-coordinating  BetaBetaAlpha-zinc finger 
MA0132.1  Pdx1  Mus musculus   Helix-Turn-Helix  Homeo 
MA0133.1  BRCA1  Homo sapiens   Other  Other 
MA0135.1  Lhx3  Mus musculus   Helix-Turn-Helix  Homeo 
MA0136.1  ELF5  Mus musculus   Winged Helix-Turn-Helix  Ets 
MA0139.1  CTCF  Homo sapiens   Zinc-coordinating  BetaBetaAlpha-zinc finger 
MA0142.1  Pou5f1::Sox2  Mus musculus   Helix-Turn-Helix  Homeo 
MA0149.1  EWSR1-FLI1  Homo sapiens   Winged Helix-Turn-Helix  Ets 
MA0062.2  GABPA  Mus musculus   Winged Helix-Turn-Helix  Ets 
MA0039.2  Klf4  Mus musculus   Zinc-coordinating  BetaBetaAlpha-zinc finger 
MA0138.2  REST  Homo sapiens   Zinc-coordinating  BetaBetaAlpha-zinc finger 
MA0002.2  RUNX1  Mus musculus   Ig-fold  Runt 
MA0047.2  Foxa2  Mus musculus   Winged Helix-Turn-Helix  Forkhead 
MA0112.2  ESR1  Homo sapiens   Zinc-coordinating  Hormone-nuclear Receptor 
MA0065.2  PPARG::RXRA  Mus musculus   Zinc-coordinating  Hormone-nuclear Receptor 
MA0151.1  ARID3A  Mus musculus   Helix-Turn-Helix  Arid 
MA0152.1  NFATC2  Mus musculus
Rattus norvegicus
Homo sapiens  
Ig-fold  Rel 
MA0153.1  HNF1B  Mus musculus
Homo sapiens  
Helix-Turn-Helix  Homeo 
MA0155.1  INSM1  Homo sapiens   Zinc-coordinating  BetaBetaAlpha-zinc finger 
MA0156.1  FEV  Rattus norvegicus
Homo sapiens  
Winged Helix-Turn-Helix  Ets 
MA0157.1  FOXO3  Mus musculus
Homo sapiens  
Winged Helix-Turn-Helix  Forkhead 
MA0158.1  HOXA5  Mus musculus
Homo sapiens  
Helix-Turn-Helix  Homeo 
MA0159.1  RXR::RAR_DR5  Homo sapiens   Zinc-coordinating  Hormone-nuclear Receptor 
MA0160.1  NR4A2  Mus musculus
Rattus norvegicus
Homo sapiens  
Zinc-coordinating  Hormone-nuclear Receptor 
MA0161.1  NFIC  Homo sapiens   Other  NFI CCAAT-binding 
MA0163.1  PLAG1  Homo sapiens   Zinc-coordinating  BetaBetaAlpha-zinc finger 
MA0164.1  Nr2e3  Mus musculus   Zinc-coordinating  Hormone-nuclear Receptor 
MA0018.2  CREB1  Mus musculus
Rattus norvegicus
Homo sapiens  
Zipper-Type  Leucine Zipper 
MA0099.2  JUN::FOS  Mus musculus
Rattus norvegicus
Homo sapiens  
Zipper-Type  Leucine Zipper 
MA0259.1  HIF1A::ARNT  Mus musculus
Rattus rattus
Homo sapiens
Oryctolagus cuniculus  
Zipper-Type  Helix-Loop-Helix 
MA0442.1  SOX10  Mus musculus
Rattus norvegicus
Homo sapiens  
Other Alpha-Helix  High Mobility Group box (HMG) 
MA0145.2  Tcfcp2l1  Mus musculus   Other  CP2 
MA0146.2  Zfx  Mus musculus   Zinc-coordinating  BetaBetaAlpha-zinc finger 
MA0141.2  Esrrb  Mus musculus   Zinc-coordinating  Hormone-nuclear Receptor 
MA0519.1  STAT5  Mus musculus   Other  STAT 
MA0518.1  Stat4  Mus musculus   Other  STAT 
MA0517.1  STAT2::STAT1  Homo sapiens   Other  STAT 
MA0516.1  SP2  Homo sapiens   Zinc-coordinating  BetaBetaAlpha-zinc Finger 
MA0515.1  Sox6  Mus musculus   Other Alpha-Helix  High Mobility Group (Box) 
MA0514.1  Sox3  Mus musculus   Other Alpha-Helix  High Mobility Group (Box) 
MA0513.1  SMAD2::SMAD3::SMAD4  Homo sapiens   Zinc-coordinating  MH1 
MA0512.1  Rxra  Mus musculus   Zinc-coordinating  Hormone-nuclear Receptor 
MA0511.1  RUNX2  Homo sapiens   Other  Runt 
MA0510.1  RFX5  Homo sapiens   Winged Helix-Turn-Helix  RFX 
MA0509.1  Rfx1  Mus musculus   Winged Helix-Turn-Helix  RFX 
MA0508.1  PRDM1  Homo sapiens   Zinc-coordinating  BetaBetaAlpha-zinc Finger 
MA0507.1  POU2F2  Homo sapiens   Helix-Turn-Helix  Homeodomain 
MA0506.1  NRF1  Homo sapiens   Other  NRF 
MA0505.1  Nr5a2  Mus musculus   Zinc-coordinating  Hormone-nuclear Receptor 
MA0504.1  NR2C2  Homo sapiens   Zinc-coordinating  Hormone-nuclear Receptor 
MA0503.1  Nkx2-5 (var.2)  Mus musculus   Helix-Turn-Helix  Homeodomain 
MA0502.1  NFYB  Homo sapiens   Other Alpha-Helix  NF-Y CCAAT-Binding 
MA0501.1  NFE2::MAF  Homo sapiens   Zipper-Type  Leucine-Zipper 
MA0500.1  Myog  Mus musculus   Zipper-Type  Helix-Loop-Helix 
MA0499.1  Myod1  Mus musculus   Zipper-Type  Helix-Loop-Helix 
MA0498.1  Meis1  Mus musculus   Helix-Turn-Helix  Homeodomain 
MA0497.1  MEF2C  Homo sapiens   Other Alpha-Helix  MADS 
MA0496.1  MAFK  Homo sapiens   Zipper-Type  Leucine-Zipper 
MA0495.1  MAFF  Homo sapiens   Zipper-Type  Leucine-Zipper 
MA0494.1  Nr1h3::Rxra  Mus musculus   Zinc-coordinating  Hormone-nuclear Receptor 
MA0493.1  Klf1  Mus musculus   Zinc-coordinating  BetaBetaAlpha-zinc Finger 
MA0492.1  JUND (var.2)  Homo sapiens   Zipper-Type  Leucine-Zipper 
MA0491.1  JUND  Homo sapiens   Zipper-Type  Leucine-Zipper 
MA0490.1  JUNB  Homo sapiens   Zipper-Type  Leucine-Zipper 
MA0489.1  JUN (var.2)  Homo sapiens   Zipper-Type  Leucine-Zipper 
MA0488.1  JUN  Homo sapiens   Zipper-Type  Leucine-Zipper 
MA0486.1  HSF1  Homo sapiens   Winged Helix-Turn-Helix  HSF 
MA0485.1  Hoxc9  Mus musculus   Helix-Turn-Helix  Homeodomain 
MA0484.1  HNF4G  Homo sapiens   Zinc-coordinating  Hormone-nuclear Receptor 
MA0483.1  Gfi1b  Mus musculus   Zinc-coordinating  BetaBetaAlpha-zinc Finger 
MA0482.1  Gata4  Mus musculus   Zinc-coordinating  GATA 
MA0481.1  FOXP1  Homo sapiens   Winged Helix-Turn-Helix  Forkhead 
MA0480.1  Foxo1  Mus musculus   Winged Helix-Turn-Helix  Forkhead 
MA0479.1  FOXH1  Homo sapiens   Winged Helix-Turn-Helix  Forkhead 
MA0478.1  FOSL2  Homo sapiens   Zipper-Type  Leucine-Zipper 
MA0477.1  FOSL1  Homo sapiens   Zipper-Type  Leucine-Zipper 
MA0476.1  FOS  Homo sapiens   Zipper-Type  Leucine-Zipper 
MA0475.1  FLI1  Homo sapiens   Winged Helix-Turn-Helix  ETS 
MA0474.1  Erg  Mus musculus   Winged Helix-Turn-Helix  ETS 
MA0473.1  ELF1  Homo sapiens   Winged Helix-Turn-Helix  ETS 
MA0472.1  EGR2  Mus musculus   Zinc-coordinating  BetaBetaAlpha-zinc Finger 
MA0471.1  E2F6  Homo sapiens   Winged Helix-Turn-Helix  E2F 
MA0470.1  E2F4  Homo sapiens   Winged Helix-Turn-Helix  E2F 
MA0469.1  E2F3  Mus musculus   Winged Helix-Turn-Helix  E2F 
MA0468.1  DUX4  Homo sapiens   Helix-Turn-Helix  Homeodomain 
MA0467.1  Crx  Mus musculus   Helix-Turn-Helix  Homeodomain 
MA0466.1  CEBPB  Homo sapiens   Zipper-Type  Leucine-Zipper 
MA0465.1  CDX2  Homo sapiens   Helix-Turn-Helix  Homeodomain 
MA0464.1  Bhlhe40  Mus musculus   Zipper-Type  Helix-Loop-Helix 
MA0463.1  Bcl6  Mus musculus   Zinc-coordinating  BetaBetaAlpha-zinc Finger 
MA0462.1  BATF::JUN  Homo sapiens   Zipper-Type  Leucine-Zipper 
MA0461.1  Atoh1  Mus musculus   Zipper-Type  Helix-Loop-Helix 
MA0520.1  Stat6  Mus musculus   Other  STAT 
MA0521.1  Tcf12  Mus musculus   Zipper-Type  Helix-Loop-Helix 
MA0522.1  Tcf3  Mus musculus   Other Alpha-Helix  High Mobility Group (Box) 
MA0523.1  TCF7L2  Homo sapiens   Other Alpha-Helix  High Mobility Group (Box) 
MA0524.1  TFAP2C  Homo sapiens   Zipper-Type  Helix-Loop-Helix 
MA0525.1  TP63  Homo sapiens   Zinc-coordinating  Loop-Sheet-Helix 
MA0526.1  USF2  Homo sapiens   Zipper-Type  Helix-Loop-Helix 
MA0527.1  ZBTB33  Homo sapiens   Zinc-coordinating  BetaBetaAlpha-zinc Finger 
MA0528.1  ZNF263  Homo sapiens   Zinc-coordinating  BetaBetaAlpha-zinc Finger 
MA0007.2  AR  Homo sapiens   Zinc-coordinating  Hormone-nuclear Receptor 
MA0102.3  CEBPA  Homo sapiens   Zipper-Type  Leucine Zipper 
MA0024.2  E2F1  Homo sapiens   Winged Helix-Turn-Helix  E2F 
MA0154.2  EBF1  Homo sapiens   Zipper-Type  Helix-Loop-Helix 
MA0162.2  EGR1  Homo sapiens   Zinc-coordinating  BetaBetaAlpha-zinc finger 
MA0076.2  ELK4  Homo sapiens   Winged Helix-Turn-Helix  Ets 
MA0258.2  ESR2  Homo sapiens   Zinc-coordinating  Hormone-nuclear Receptor 
MA0098.2  Ets1  Mus musculus   Winged Helix-Turn-Helix  Ets 
MA0148.3  FOXA1  Homo sapiens   Winged Helix-Turn-Helix  Forkhead 
MA0035.3  Gata1  Mus musculus   Zinc-coordinating  GATA 
MA0036.2  GATA2  Homo sapiens   Zinc-coordinating  GATA 
MA0037.2  GATA3  Homo sapiens   Zinc-coordinating  GATA 
MA0114.2  HNF4A  Homo sapiens   Zinc-coordinating  Hormone-nuclear Receptor 
MA0050.2  IRF1  Homo sapiens   Winged Helix-Turn-Helix  IRF 
MA0058.2  MAX  Homo sapiens   Zipper-Type  Helix-Loop-Helix 
MA0052.2  MEF2A  Homo sapiens   Other Alpha-Helix  MADS 
MA0100.2  Myb  Mus musculus   Helix-Turn-Helix  Myb 
MA0147.2  Myc  Mus musculus   Zipper-Type  Helix-Loop-Helix 
MA0104.3  Mycn  Mus musculus   Zipper-Type  Helix-Loop-Helix 
MA0150.2  Nfe2l2  Mus musculus   Zipper-Type  Leucine Zipper 
MA0105.3  NFKB1  Homo sapiens   Ig-fold  Rel 
MA0060.2  NFYA  Homo sapiens   Other Alpha-Helix  NFY CCAAT-binding 
MA0014.2  PAX5  Homo sapiens   Helix-Turn-Helix  Homeo 
MA0080.3  Spi1  Mus musculus   Winged Helix-Turn-Helix  Ets 
MA0143.3  Sox2  Mus musculus   Other Alpha-Helix  High Mobility Group box (HMG) 
MA0079.3  SP1  Homo sapiens   Zinc-coordinating  BetaBetaAlpha-zinc finger 
MA0083.2  SRF  Homo sapiens   Other Alpha-Helix  MADS 
MA0137.3  STAT1  Homo sapiens   Ig-fold  Stat 
MA0144.2  STAT3  Homo sapiens   Ig-fold  Stat 
MA0140.2  TAL1::GATA1  Homo sapiens   Zipper-Type  Helix-Loop-Helix 
MA0003.2  TFAP2A  Homo sapiens   Zipper-Type  Helix-Loop-Helix 
MA0106.2  TP53  Homo sapiens   Zinc-coordinating  Loop-Sheet-Helix 
MA0093.2  USF1  Homo sapiens   Zipper-Type  Helix-Loop-Helix 
MA0095.2  YY1  Homo sapiens   Zinc-coordinating  BetaBetaAlpha-zinc finger 
MA0103.2  ZEB1  Homo sapiens   Zinc-coordinating  BetaBetaAlpha-zinc finger 
MA0591.1  Bach1::Mafk  Mus musculus   Zipper-Type  Leucine-Zipper 
MA0592.1  ESRRA  Homo sapiens   Zinc-coordinating  Hormone-nuclear Receptor 
MA0593.1  FOXP2  Homo sapiens   Winged Helix-Turn-Helix  Forkhead 
MA0594.1  Hoxa9  Mus musculus   Helix-Turn-Helix  Homeodomain 
MA0595.1  SREBF1  Homo sapiens   Zipper-Type  Helix-Loop-Helix 
MA0596.1  SREBF2  Homo sapiens   Zipper-Type  Helix-Loop-Helix 
MA0597.1  THAP1  Homo sapiens   Zinc-coordinating  THAP 
MA0598.1  EHF  Homo sapiens   Winged Helix-Turn-Helix  ETS 
MA0599.1  KLF5  Homo sapiens   Zinc-coordinating  BetaBetaAlpha-zinc Finger 
MA0600.1  RFX2  Homo sapiens   Winged Helix-Turn-Helix  RFX 
MA0113.2  NR3C1  Mus musculus   Zinc-coordinating  Hormone-nuclear Receptor 
 
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